The invention discloses an infrared photodissociation spectrometer based on an ion trap mass analyzer. An ion detector and an infrared laser system are provided, and the transmission line, octopole, hexapole, and low-temperature linear ion trap are set in a four-stage differential pumping vacuum system; the electrospray device is used as an ionization source, and the neutral The substance is ionized into ions, and then transmitted to the low temperature linear ion trap through the transmission line, octopole and hexapole. The low temperature linear ion trap is used as a mass analysis device. The infrared light output by the infrared laser system is incident on the low temperature linear ion trap. Complete ionization, ion cooling, ion selection, infrared photodissociation, mass analysis and emptying in a low temperature linear ion trap. The invention has the characteristics of miniaturization, low price, easy maintenance, good stability, high sensitivity and resolution.