The invention provides an airflow-separated hydrogen-rich water cup and a work method thereof. The airflow-separated hydrogen-rich water cup comprises a cup body, a cover body connected with the top of the cup body in a detachable way, a base fixedly connected with the bottom of the cup body in a sealing way, and an electrolysis unit installed in the cup body, wherein a power supply module and a printed circuit board (PCB) are installed in the base; a control circuit is arranged on the PCB; a heating ring and a temperature sensor are arranged on the top of the base; the cover body comprises a water storage bin, a filter element arranged at the bottom of the water storage bin, and a bottle cap connected with the top of the water storage bin in a detachable way; an air escape valve is arranged on the top of the bottle cap; the electrolysis unit comprises an electrode holder connected with the bottom of the base, a gas-collecting hood installed on the top of the electrode holder, and a negative plate, a first isolation plate, an ionic membrane, a second isolation plate and an anode plate which are installed on the electrode holder from top to bottom; vent holes are formed in the electrode holder under the anode plate; the power supply module, the temperature sensor, the heating ring, the negative plate and the anode plate are respectively connected with the control circuit. The airflow-separated hydrogen-rich water cup not only solves the interference effect of oxygen bubbles on the rising process of hydrogen bubbles, but also increases the types of electrolysed water, and is convenient to use.