The invention provides a method for preparing healthy oil from platycarya strobilacea seeds. The method comprises steps as follows: the platycarya strobilacea seeds are ground, water is added, pH value of a feed liquid is regulated, amylase, acid protease and cellulase are added for enzymolysis, and oil and wastewater are obtained after centrifugation; the wastewater is adsorbed by 732 cation exchange resin, and effluent is obtained, used in next enzymolysis and oil extraction cycling steps and cycled 3-5 times for use; wastewater produced through cycling oil production and 2-3 times by weight of waste residues are taken as raw materials, water content is enabled to reach 30%-40%, 10%-20% by mass of bacillus subtilis powder is added, and aerobic fermentation culture is performed at 30-40 DEG C for 24-48 h. According to the method, protein content is reduced in an extraction process of platycarya strobilacea seed oil, so that an emulsification effect is obviously weakened, dissolving-out speed of phenols, tannin, saponin and other substances is reduced, water recycling is facilitated, and emission amount of the wastewater is reduced; due to the fact that the wastewater and the waste residues are directly used as the basis for producing fermented feed, risk of environmental pollution caused by the wastewater can be greatly reduced, and the use value of effective components in the wastewater is also improved.