The invention discloses a microbial organic fertilizer. The microbial organic fertilizer is prepared from the following raw materials in parts by weight: 10-15 of peanut oil residue, 25-30 of pig manure, 4-8 of kieselguhr, 1-2 of starch, 10-15 of diammonium hydrogen phosphate, 18-22 of potassium chloride, 1-2 of effective microorganisms (EM) microbial agent, 10-15 of rot pear, 15-20 of rot orange, 20-25 of mushroom residue, 10-12 of silkworm dropping, 2-4 of amino acid chelation liquid, 8-12 of overdue milk, 2-4 of fructus cnidii, 2-5 of dried tea residue, 2-4 of eucalyptus leaves and 1-2 of pumpkin vine. By the microbial organic fertilizer, disease resistance and drought resistance of crops can be effectively improved, and the harm to the soil is also correspondingly slowed down; the rot fruit syrup, the dried tea residue, the peanut oil residue and the like are airtightly fermented and used, so that the nutrient content of the microbial organic fertilizer is enriched, the cost is saved, and wastes are turned into wealth; and the nutrients of traditional Chinese medicines can play good function when the traditional Chinese medicines are soaked through vinegar, are easy to release and thus can be absorbed by crops.