The invention discloses an evening essence B-casein phosphopeptide-chitosan nano particle, a preparation method and applications thereof. The preparation method comprises the following steps: preparing a CPPs solution, a CS solution, and an OEB solution, adding three solutions in a certain sequence, evenly mixing, controlling the mass percentage of CPPs and OEB of the final solution and the total concentration of CPPs, CS, and OEB of the solution, adjusting the pH value of the system to obtain nano spheres; then adding genipin to fix the nano spheres to obtain nano suspension, and subjecting the nano suspension to centrifugation and drying to obtain the evening primrose essence B-casein phosphopeptide-chitosan nano particles. The nano particle has the advantages of adjustable particle size, high embedding rate, pH responding property, green, energy saving, safety, stomach acid resistance, and sustain-released function, and can be widely used in the fields such as pharmacy, food, healthcare product, and the like.