The invention discloses compound powder of an anti-stress agent for aquaculture and a preparation method thereof. The compound powder of the anti-stress agent for aquaculture comprises, by weight, 3-4 parts of vitamin C, 3-4 parts of glucose powder, 1-2 parts of skullcap powder and 2-3 parts of dolomite dust. The preparation method comprises the following steps of smashing, screening, weighing and mixing. The compound powder contains definite ingredients, is stable in effect, convenient to use and high in bioavailability, can be directly taken orally and is not influenced by weather and environment conditions. After the compound powder is used, the constitution and food intake of fish bodies can be rapidly recovered, stress reaction is reduced, the fish bodies can get right as soon as possible, the medicine ingredients in the compound powder are safe and green, non-toxic, environmentally friendly and free of residues to aquatic animals including fishes, shrimps, crabs and the like, the constitution of the fish bodies is enhanced while the stress reaction is reduced, normal ingestion is not influenced, and healthy growth is promoted.