A method for preparing magnetic suspended coding micro-block array chips and a method for applying the preparation method, the preparation method is that firstly, selecting five same silicon sheets, and cleaning and drying the silicon sheets, secondly, coating PMMA glue, thirdly, hot padding, fourthly, utilizing an oxygen plasma body to carry out the reactive ion etching, adjusting the thickness of the glue to be 10-20 nm, fifthly, plating titanium 80-100 nm and gold 50-60 nm through vacuum evaporation, taking the titanium as a gluing and sacrificing layer, sixthly, plating nickel 10-15 nm as a gluing layer through vacuum evaporation, seventhly, plating copper 120-1250 nm through the vacuum evaporation, eighthly, evaporating nickel 30-50 nm through electronic beams, ninthly, plating gold 50-60 nm through vacuum evaporation, tenthly, stripping-off glue, and releasing suspended micro block array ships. The application method is that firstly, cleaning gold blocks, secondly, forming a monomolecular layer on the gold blocks through 11-mercapto carboxylic acid, thirdly, marking the gold blocks through biological macromolecule, fourthly, fluorescence detecting. Chips prepared by the invention have the characteristic of superparamagnetism, thereby conditions are created for biological decoration and biological magnet separation.