The invention provides a hybrid polyurethane-polyacrylate dispersoid containing fluorine and siloxane and a preparation method thereof, wherein, an interpenetrating network structure and a nuclear shell structure exist in a dispersoid particle simultaneously. The hybrid polyurethane-polyacrylate dispersoid is polymerizing a polyurethane dispersoid containing double bonds (10-20 percent), a fluorine-containing monomer (5-15 percent), a fluorine-free monomer (10-30 percent), an initiating agent (0.1-2.0 percent), an emulsifying agent (0.5-5 percent), a chain transfer agent (0.01-0.5 percent) and deionized water (50-70 percent) by emulsion. The dispersoid is white lacteal liquid, contains no organic solvent, and has a solid content of 30-50 percent, a molecular weight of 10,000-100,000, a pH value of 7-9, a viscosity of 30-300cp and a stationary phase of more than 1 year. Paint films prepared by the dispersoid have good physical property and relatively low surface energy and can be applied to providing surface coatings with excellent water-proof/ antifouling performance.