The invention relates to an improved CTAB method for extracting polygonum capitatum DNA. The method comprises the following steps: fetching polygonum capitatum, grinding polygonum capitatum into powder in liquid nitrogen, transferring the powder to a centrifuge tube, adding a CTAB extracting buffering solution, fully shaking the centrifuge tube, carrying out water bath and centrifugation; obtaining the supernate, adding chloroform and isoamyl alcohol with an equal volume, transferring the supernate to another centrifuge tube, collecting the supernate again, extracting the supernate by chloroform and isoamyl alcohol; adding NaAc and isopropanol into supernate, slightly turning over the centrifuge upside down to evenly mix the solution, carrying out centrifugation, discarding the supernate, washing the precipitate by ethanol (70%), carrying out centrifugation, absorbing ethanol by a small gun head, drying the precipitate in the air; removing the ethanol in precipitate, dissolving and digesting the precipitate by TE containing RNA enzymes until the RNA is completely degraded; extracting the solution by phenol, chloroform, and isoamyl alcohol with an equal volume respectively, adding supernate into NaAc and cold anhydrous ethanol, slightly and evenly mixing, carrying out centrifugation, washing the precipitate by an ethanol solution (70%), drying the precipitate in the air, adding a TD solution to dissolve the precipitate, and finally preserving the solution at a low temperature. The modified CTAB method is used to extract polygonum capitatum DNA and has the advantages of simpleness, low cost, and higher purity of polygonum capitatum DNA.