The present invention relates to a method that synthesizes the silicone prepolymer containing double bond and various chain segments, in sequence, by the cohydrolysis of silane containing hydrogen, silane containing chloro and alkoxy silane, and the reaction with allyl compounds under catalytic agent. The prepolymer will be copolymerized with (meth)acrylate to acquire the surface hydrophobic strength- controllable silicone modified acrylic resin composite. The composite is water soluble, and has good adhesion, gloss, softness, hydrophobicity and weatherability; it is regulable for the hydrophobic, antifouling and scrubbing resistant abilities of the composite surface, according to demands. Moreover, the product is simple in its production process, low in its cost, and very friendly to environment, which can be used in various fields such as leather, textile, construction and ship.