The invention relates to a novel method for processing fresh bee larva and bee pupae through microwave vacuum freezing drying, which is mainly characterized in that the technology of adopting microwaves for providing heat required by the sublimation drying and the resolution drying in the vacuum freezing drying, adopting optical fiber/infrared rays for temperature measurement control and the like for carrying out deep processing on the bee larva and bee pupae. The technical processes comprise fresh bee larva and bee pupae pretreatment or pulping treatment, disc loading, pre-freezing, vacuum sublimation drying, vacuum resolution drying and the like, the ordinary vacuum freezing drying process generally adopts the surface heating, the heat resistance is great, and the drying speed rate is low, so the whole freeze drying process lasts for a long time, and the defects can be overcome when the microwave heating is used for providing the heat required by sublimation. The processing method has the advantages that nutrient contents of biological substances of the bee larva and the bee pupae and the like can be effectively preserved, and the shapes of the bee larva and the bee pupae can be perfectly maintained. The microwaves have the penetrating performance, the heat efficiency is high, the energy sources are saved, the processing speed is greatly accelerated, the drying time is shortened, and the efficiency is improved.