The invention discloses a hydraulic cyclone anaerobic digestion tower and a using method thereof. A flow guiding cylinder is arranged in the center of a tower body, a submersible motor is arranged at the middle part in the flow guiding cylinder, the lower part of the submersible motor is connected with a lifting impeller, the flow guiding cylinder is connected with two flow guiding tubes, a circle of annular flow stabilizing plates are arranged between the upper layer flow guiding tube and the tower body, a feeding tube which is used for communicating the external and the flow guiding cylinder is arranged at the bottom on the side wall of the tower body, a slag collection bucket is connected with the bottom of the tower body, the side surface of the slag collection bucket is connected with a slag discharge tube, and a biogas tube is arranged on a top cover of the tower body and is in signal connection with a pressure transmitter and an electric control box. According to the hydraulic cyclone anaerobic digestion tower disclosed by the invention, by utilizing a mode of a hydraulic cyclone, material stirring, scum crushing as well as raw and cooked material separation are realized, the anaerobic digestion treatment efficiency is improved, the biogas yield is increased, and the energy consumption of anaerobic digestion treatment is saved; and in addition, a changed intensity anaerobic digestion process is adopted according to the pressure of biogas, so that automatic running and regulation of a biogas production and utilization system can be realized. The hydraulic cyclone anaerobic digestion tower can be widely applied to anaerobic digestion treatment of high concentration organic wastes such as waste water, waste liquor, wastes, excrement, sludge and the like.