The invention discloses a modified solid electrolyte membrane, a preparation method thereof and a lithium battery. The modified solid electrolyte membrane comprises a basic membrane and a solid electrolyte layer. The solid electrolyte layer is formed by a coating slurry which is coated on the basic membrane or is coated on the basic membrane and even permeate into the basic membrane, a thickness ratio of a coating layer on the basic membrane to the basic membrane is 10:1-1:10, the thickness of the coating layer is in a range of from 1 micrometer to 10 micrometers, and the density of the coating layer is in a range of from 50% to 100%. The solid electrolyte layer is formed by a NAS I CON type solid electrolyte material, have practical size smaller than 1 micrometer and is specifically represented as Li1+xAxB2-x(PO4)3, wherein x is in a range of from 0 to 0.6, A is one or more of Al, Y, Ga, Cr, In, Fe, Se or La, B is one or more of Ti, Ge, Ta, Zr, Sn, Fe, V or hafnium element Hf, and after the solid electrolyte membrane is circularly formed, a photoelectronic energy spectrum of an X-ray of the solid electrolyte membrane has a peak between 685eV to 690eV.