The invention provides an additive having a function of regulating intestines and stomach of a pet as well as preparation method and application thereof, and belongs to the technical field of animal feed. The additive having the function of regulating the intestines and the stomach of the pet is prepared from the following components in parts by weight: 2 to 10 parts of lactobacillus acidophilus powder, 1 to 5 parts of fructus crataegi, 2 to 10 parts of rhizoma dioscoreae, 2 to 10 parts of poria cocos, 1 to 5 parts of liquorice root and 1 to 5 parts of pericarpium citri reticulatae, wherein the viable bacteria concentration of the lactobacillus acidophilus powder is 0.5*10<10> to 1.5*10<10> CFU (Colony Forming Unit) / g. The additive provided by the invention is capable of obviously increasing anti-stress capability of puppies in a weaning stage and regulating the gastrointestinal function, an experiment shows that compared with a control group, the prevalence rate, the appetite, the skin and hair glossiness, the activity, the daily gain and the intestinal flora composition of an experimental group are all remarkably improved, and compared with a rhizoma dioscoreae and poria cocos taste-lack group, the prevalence rate, the appetite, the skin and hair glossiness, the activity and the daily gain of the experimental group have remarkable difference.