A method of sequencing a
nucleic acid characterized by the steps of: (1) generating a
stream of mononucleoside triphosphate by progressive
enzymatic digestion of the
nucleic acid; (2) producing at least one
oligonucleotide-used probe by reacting at least one mononucleoside triphosphate with a corresponding biological probe in the presence of a
polymerase, the corresponding biological probe comprising (a) a first single stranded
oligonucleotide comprising an
exonuclease closure site and (b) a second single stranded
oligonucleotide comprising an
exonuclease closure site; the present invention relates to a kit comprising (a) a single
nucleotide triphosphate, (b) a closure site 5'side of the closure site and comprising a restriction
endonuclease recognition site for capturing the mononucleotide triphosphate, and at least one
fluorophore region located 5 'side of the recognition site and arranged to quench a
fluorophore, and (b) second and optionally third
single stranded oligonucleotides, their isolated from the first oligonucleotides, respectively, and capable of hybridizing to complementary regions on the first oligonucleotides flanking the capture sites 3'and 5 '; (3) cleaving the first oligonucleotide strand of the used probe at a recognition site with a restriction
endonuclease to produce a first oligonucleotide component with a
fluorophore; (4) digesting the first oligonucleotide component with an
enzyme having 3 '-5' exonucleotide activity to produce a fluorophore in a detectable state, and (5) detecting the fluorophore released in step (4). Also provided are corresponding methods for use with enzymes having 5 '-3'
exonuclease activity, as well as novel bioprobes and kits obtained therefrom.