The invention discloses a multifunctional soil-modifying antifungal and anti-nematode-disease soil conditioner, a preparation method thereof and a use method thereof, and belongs to the field of soilconditioners. The multifunctional soil-modifying antifungal and anti-nematode-disease soil conditioner mainly consists of a decomposed organic fertilizer, coco coir, pine sawdust or pine bark powder,perilla powder, clove leaf powder, rice bran, soybean meal powder, lignite, zeolite powder, brown sugar, fine river sand, calcium cyanamide, ammonium sulfate, calcium superphosphate, potassium chloride, calcium magnesium phosphate fertilizer, zinc sulfate heptahydrate, borax and potassium fulvic acid. The multifunctional soil-modifying antifungal and anti-nematode-disease soil conditioner is spread to the surface of soil in the dosage of 100-120kg per mu, a rotary tiller is used for rotary tillage of the soil, water is sprayed, then the soil is covered with a mulch film, the periphery of the mulch film is sealed with soil, and a warm house or a greenhouse is kept in heat; after 10 to 15 days, the mulch film is uncovered for sowing. The multifunctional soil-modifying antifungal and anti-nematode-disease soil conditioner can be used for soil-modifying antifungal and anti-nematode-disease treatment of the environment of the warm house or the greenhouse, prevents salinization, neutralizesacidity, promotes plant growth, and is prepared from wide-source and low-cost organic by matching with other raw materials in a suitable ratio.