The invention discloses a preparation method of physcomitrella patens protoplast. The preparation method comprises the following steps of S1, taking physcomitrella patens cormus or protonema, performing homogenization to obtain homogenate, and putting the homogenate into a BCDAT culture medium for alternate culture of 16-hour illumination and 8-hour dark treatment; S2, dissolving a mixed enzyme ina 6-10% mannitol solution, carrying out uniform vortex mixing, performing centrifuging, taking supernatant, and performing filtering to obtain a mixed enzyme solution; and S3, putting the protonema obtained in the step S1 into the mixed enzyme solution prepared in the step S2, performing uniform mixing, carrying out enzymolysis, performing filtering, performing centrifuging to remove supernatant,performing resuspending by using the 6-10% mannitol solution, and repeating the process for 2-3 times to obtain a suspension, namely the physcomitrella patens protoplast, wherein the mixed enzyme inthe step S2 is any two or three of cellulase, hemicellulase and pectinase. The protoplast prepared by the method is high in quality and good in activity, the regeneration efficiency is guaranteed on the premise that the number of protoplasts is guaranteed, and the preparation method is simple, low in cost and wide in application prospect.