The invention discloses a method for rapidly measuring patulin in fruit jam and vegetable paste, comprising the following steps: weighing 2.00g of fruit jam and vegetable paste in a centrifuge tube, adding 0.5-3mL of water, shaking, adding 5mL of ethyl acetate-normal hexane solution (95+5, v/v), shaking, simultaneously adding 0.5-2g of sea sands, 4-8g of anhydrous sodium sulfate and 0.5-2g of sodium bicarbonate, shaking vigorously for 2min, and centrifuging for 3min; and weighing 4mL of supernate until ethyl acetate activates a carbon black columella, receipting eluent by a test tube in which glacial acetic acid is added, eluting by 3-7mL of ethyl acetate, and drying; dissolving 240 mu L of acetonitrile, pipetting 150 mu L of dissolution liquid into a sample bottle, adding 50 mu L of derivatization reagent, heating by microwave for 1-7min, cooling and then measuring by gas chromatography-mass spectrometry. The method is rapid, simple, sensitive, accurate, specific and durable in confirmation and quantification, and is widely applied to the measurement filed of patulin in fruit jam and vegetable paste.