The invention discloses a method for preparing fishskin fish-scale collagen protein. The method includes the steps of processing fishskin, processing fish scale, preparing collagen protein and the like. The fish scale processing includes the steps of preprocessing, decalcifying, neutralizing and removing immunities, washing, injecting sol, solid and liquid separation, filtering and obtaining a water-soluble collagen solution generated after fish scale is removed. The collagen protein preparing includes the steps of hydrolysis, enzymolysis, collagen protein filtering and separation, enzyme deactivation, decolorization, fishy smell elimination, drying and the like. The ash content in obtained collagen peptide is obviously lower than that of other enzymolysis methods, and no fishy smell exists. According to the method, hydrolysis is conducted on collagen through compound protease and bromelain, the yield of micromolecule collagen peptide is high, and the enzymic preparation is low in cost and free of bitter taste. By means of the method, the production cost of the collagen peptide can be lowered remarkably, the obtained collagen peptide is white and tasteless powder, the ash content is smaller than 0.5%, and peptide fragment with the molecular weight smaller than 3000 Da accounts for over 96% of total nitrogen.