The invention relates to a method for recombination-mediated escherichia coli genome point mutation, which is realized as follows: a modified fragment is obtained through overlapping-extending polymerase chain reaction, wherein two 50bp homologous arms are located at two ends of the modified fragment and are consistent with two sides of a target site in sequence, and further, the middle part of the homologous arm comprises a mutation site, a 30bp homologous fragment consistent with downstream sequences of the target site, and a kanamycin resistance gene with two homing nuclease I-SceI enzyme cutting sites on two sides; and then, the fragments between the two 50bp homologous arms are integrated to a colon bacillus genome, the mutation site replaces the target site on the genome, and a kanamycin resistance mutant strain is obtained. Subsequently, heat-inactivated chlorotetracycline induces the expression of the I-SceI enzyme, and catalyze the 30bp homologous fragment to undertake homologous recombination with the 30bp homologous fragment downstream the target site, as a result, the 30bp homologous fragments, the two I-SceI enzyme cutting sites and the kanamycin resistance gene are eliminated, and a colon bacillus mutant strain with point mutation can be obtained.