The invention discloses a preparation method of surface enhanced Raman substrate (SERS). The preparation method comprises the following steps: step a, forming a surface enhanced Raman substrate (SERS) on a surface enhanced layer formed by attaching nano silver particles on a basic layer; step b, preserving the surface enhanced Raman substrate (SERS) formed in the step a in the protection of inert gas. Because the nano silver particle substrate is preserved in the protection of nitrogen gas, the surface will not be oxidized after a long period, thus the substrate, which has been preserved for a long time, still has a very good enhancing effect when the substrate is applied to an SERS substrate. The SERS has ultrahigh analysis sensitivity, is suitable for the detection of ultra-trace samples, has the advantages of simple preparation, short production time, low cost, and suitability for batch production, and provides conditions for promoting the SERS technology to be used in the fields of national security, environmental supervision, food safety, medical treatment and public health, and the like.