The invention discloses a preparation method suitable for industrialized continuous production of enzyme modified concentrated phospholipids. The preparation method comprises the following steps: a, adding phospholipase A1, phospholipase A2, and a 1, 3-lipase aqueous solution into concentrated phospholipids for enzymatic modification reaction; b, pumping the concentrated soybean phospholipids after enzymatic modification into a fixed scraper film evaporator for dehydration by continuous evaporation and enzyme inactivation through a screw pump, so as to enable the moisture to be decreased to 1% or below; c, concentrating, dewatering, cooling the inactivated enzyme modified phospholipids with a cooler, and introducing the cooled enzyme modified phospholipids into a vacuum stirring tank for removing oxygen in the modified phospholipids, so as to obtain the enzyme modified soybean phospholipids with good storage stability. The preparation method is suitable for continuous industrial production, the processing technology is easy and convenient, the production efficiency is remarkably improved, and the produced enzyme modified soybean phospholipids are good in dispersity, hydrophilia and heat resistance in water, quite good in emulsion stability in a low pH value range and hyper-salt concentration, and widely applicable to the industries, such as, food, medicine, daily-use chemicals, pesticides, paint coatings, leather and textile, petrochemical industry and fodder.