The invention discloses a cationic functional 
fluorine-containing 
polymer and a preparation method thereof. The functional 
fluorine-containing 
polymer is a cationic functional 
fluorine-containing 
polymer prepared by the steps of: taking a fluorine-containing 
monomer, a graftable active 
monomer and a hydrophilic 
functional monomer as copolymerization monomers, firstly polymerizing, in a water phase dispersion 
system, the copolymerization monomers into an active 
precursor polymer of which the main chain contains an atom transfer free 
radical polymerization active side group, then initiating a cationic 
functional monomer by using the active side group on a 
solid liquid interface to perform interface atom transfer free 
radical polymerization, and performing 
polymerization to form the cationic functional fluorine-containing polymer containing a cationic type 
side chain. The cationic type 
side chain contains 
quaternary ammonium salt type and 
quaternary phosphonium salt type groups, has a very strong charge positive electrical property, and enables the polymer to have very strong antibacterial performance, hydrophilic performance and anion exchange absorbing performance, and the polymer can be applied separately to preparation or together with other resin to blending preparation of a high-hydrophilicity antibacterial separation membrane product, a gel 
electrolyte, an 
adhesive, a battery diaphragm, an anion exchange adsorbing material and an 
antibacterial coating, so that the application range of 
vinyl chloride type polymers is greatly broadened; and in comparison with an existing material, the polymer is good in hydrophilicity, is antibacterial, and is good in application prospect.