The invention relates to a magnetic biomimetic catalyst and a preparation method and an application method thereof. The preparation method adopts the technical scheme that the preparation method comprises the following steps of uniformly mixing coal-based carbon and a KOH (potassium hydroxide) solution, and treating for 1 to 2h under the vacuum atmosphere at the temperature of 105 DEG C; putting into a microwave generation device, and activating at the temperature of 300 to 700 DEG C; cooling, adding deoxidizing and deionizing water, stirring, standing, and obtaining an upper KOH recycling liquid and a lower precipitate; washing the lower precipitate, and drying, so as to obtain the modified coal-based carbon; uniformly mixing FeSO4.7H2O (ferrous sulfate), the modified coal-based carbon and the deoxidizing and deionizing water, so as to obtain suspension liquid; uniformly mixing NaNO3 (sodium nitrate), NaOH (sodium hydroxide) and the deoxidizing and deionizing water, dripping into the suspension liquid, stirring, and standing; washing the lower magnetic precipitate to neutral state, and drying, so as to obtain the magnetic biomimetic catalyst; uniformly mixing the magnetic biomimetic catalyst and organic wastewater, adding H2O2 (hydrogen peroxide), stirring, and treating, so that the COD (chemical oxygen demand) and chroma of the organic wastewater can reach the national industrial regeneration water quality standard. The preparation method has the characteristics that the technology is simple, the operability is high, the cost is low, the yield is high, and the environment-friendly effect is realized.