The invention belongs to the field of fluorine chemical synthesis and particularly relates to a fluorination method for end groups of perfluoropolyether acid. The perfluoropolyether acid and a fluorinating agent are taken as raw materials for synthesis in a gas-liquid contact reaction tube with fluorine gas passivated filler as a filling agent, and the filler adopts one or a mixture of carbon steel, stainless steel 304 and stainless steel 316. The perfluoropolyether acid or a solution thereof sprays downwards from the top of the gas-liquid contact reaction tube, a fluorinating agent gas makes sufficient contact with perfluoropolyether continuously from bottom to top through filler gaps in the gas-liquid contact reaction tube, maximized gas-liquid contact is realized, so that the utilization of the fluorinating agent is realized to the greatest extent, and fluorination of the perfluoropolyether is sufficient and complete. Besides, the perfluoropolyether is subjected to continuous fluorination, the problem of kettle-by-kettle fluorination in the prior art is solved, and the operation procedure is simplified. Few by-products are produced during fluorination of the perfluoropolyether, the operation is simple, continuous production can be realized, reactions are safe and stable, and the method is suitable for industrial mass production and application.