The invention discloses a method for preparing a molecularly imprinted paper chip sensor through the click chemistry technology. The Adobe Illustrator CS4 is adopted for designing paper chip printing patterns, a wax springing printer is adopted for printing patterns in batches to paper, heating and wax melting are carried out to manufacture a hydrophobic wall, a working electrode, a reference electrode and a counter electrode are printed through the screen printing technology, and gold nanoparticles grow on the paper filter surface by the adoption of a seed growth method. Azide alkyl mercaptan is fixed to the paper fiber gold nano material surface and subjected to a click chemistry reaction with propargyl acrylate, a functional monomer of synthetic organophosphorus pesticide molecularly imprinted polymer is selected, template molecules, the functional monomer, quantum dots, the cross-linking agent, the pore-foaming agent, the initiator and the organic solvent of organophosphorus pesticides are evenly mixed according to a certain substance amount, a polymerization reaction is induced under 365nm ultraviolet light, and a paper fiber surface molecularly imprinted polymer film is prepared. High-selectivity, high-sensitivity, low-cost and real-time-detection for organophosphorus pesticide is achieved by the adoption of a photoinduced electricity chemical method.