The invention discloses a wheat malt composite powder and a preparation method thereof.Wheat malt powder with a natural color, a natural flavor and a natural taste is scientifically compounded with functional products such as lactobacillus plantarum powder, modified dietary fibers, ferment powder and oligosaccharide, so that the trophism, the food safety and the healthcare function of the wheat malt composite powder are effectively improved, and the probiotic property and the quality stability of the wheat malt composite powder are also significantly improved.The wheat malt composite powder is prepared from simple components and is natural in color, flavor and taste, high in nutritive value, strong in healthcare function, high in food safety and long in shelf life, the content of bioactive substances is high, the viable count of probiotics is high, the probiotic property is high, and complete varieties of functional metabolites of probiotics are provided with a high content.Ultrasonic cleaning, instant microwave puffing and germ killing, high-voltage pulse processing, combined biological enzymolysis and soaking and germination accelerating are adopted in the wheat malt preparation process.The soaking and germination time is short, the germination rate is high, the content of bioactive substances is high, the production efficiency is high, environmental pollution is avoided, and environmental friendliness is achieved.