The invention discloses a special compacting agent for anti-permeability and anti-cracking concrete, and belongs to the technical field of building materials. According to the compacting agent, calcium nitrate solution, chitosan liquid, a modifying addition agent, urea and bacillus pasteurii liquid are stirred and mixed, sodium sulfate solution is added, then stirred and mixed, cooling is conducted, glutaraldehyde solution is dropwisely added, then stirred and mixed, pH is adjusted, and filtering and drying are conducted to obtain modified microcapsules; 20-30 parts of modified sodium alginatesolution, 20-30 parts of calcium bicarbonate solution, 30-40 parts of basic phenolic resin, 20-30 parts of the modified microcapsules, 20-30 parts of gelatin solution, 8-10 parts of phospholipid and8-10 parts of plant essential oil, by weight, are placed in a mixing machine, and stirred and mixed at a speed of 300-500 r/min for 40-60 min to obtain the special compacting agent for the anti-permeability and anti-cracking concrete. The special compacting agent prepared by the above technical scheme has the advantages that the crack resistance, mechanical properties and anti-permeability performance of the concrete are significantly improved.