The invention discloses a preparation method of a nanometer Zn/Al ZSM-5 molecular sieve, relates to the preparation method of a nanometer molecular sieve, and aims to solve the problems that the nanometer Zn/Al ZSM-5 molecular sieve is prepared by the existing method, the template agent usage amount is high, the template removing agent roasting time is long, the cost is high, the toxicity is high, and the pollution is serious. The preparation method comprises the following steps of: preparing gel by aluminum isopropoxide, tetrapropylammonium hydroxide, tetraethoxysilane and deionized water, and crystallizing the gel so as to obtain a pre-crystallized seed crystal; and adding the pre-crystallized seed crystal which takes up 1%-5% of the total mass of the gel into a mixed gel prepared by zinc nitrate hexahydrate, sodium hydroxide, partial sodium aluminate, deionized water and silica sol, thereby obtaining the nanometer Zn/Al ZSM-5 molecular sieve through centrifugation, washing, drying, roasting and cooling after crystallization. The nanometer Zn/Al ZSM-5 molecular sieve disclosed by the invention is low in template agent usage amount, short in template removing agent roasting time, low in cost, low in toxicity, and tiny in pollution. The nanometer Zn/Al ZSM-5 molecular sieve disclosed by the invention is suitable for production of the nanometer molecular sieve.