The invention discloses high-concentration nano-carbon cotton special fertilizer and a preparation method thereof, and belongs to the technical field of fertilizer. The high-concentration nano-carbon cotton special fertilizer obeys a cotton nutrient absorption rule and is prepared form raw materials of urea, potassium dihydrogen phosphate, potassium chloride, calcium-magnesium-phosphate fertilizer, monoammonium phosphate, ferrous sulphate, zinc sulfate, ethylene diamine tetraacetic acid (EDTA)-manganese chelate, borax, ammonium molybdate and nano-carbon according to certain ratios. The preparation method comprises the following steps of melting urea at a high temperature, carrying out pressurization, mixing the melted urea and other raw materials well, carrying out crushing and sieving, heating, preparing paste, carrying out vibration filtration, carrying out sprinkling and forming, cooling, sieving, carrying out anti-caking treatment and carrying out packaging. The high-concentrationnano-carbon cotton special fertilizer has comprehensive nutrition, balanced fertilizer components and a high fertilizer utilization rate, and can improve a cotton yield and cotton quality.